Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| COAD | rs62360497 | chr5:54653919 | C/T | 1.48E-5 | 263 | 17.8 | 19.93 | 5.73 | KM Plot |
| COAD | rs62426791 | chr6:128839278 | G/A | 4.83E-6 | 262 | 19.33 | 15.8 | 5.73 | KM Plot |
| COAD | rs62426792 | chr6:128840684 | C/T | 6.34E-6 | 257 | 18.1 | 15.23 | 5.73 | KM Plot |
| COAD | rs62426793 | chr6:128841648 | C/T | 6.03E-6 | 257 | 19.32 | 15.1 | 5.73 | KM Plot |
| COAD | rs62426795 | chr6:128844813 | T/C | 1.88E-12 | 260 | 18.08 | 15.8 | 5.3 | KM Plot |
| COAD | rs62426796 | chr6:128845021 | C/T | 2.86E-13 | 258 | 18.08 | 15.8 | 5.3 | KM Plot |
| COAD | rs62426797 | chr6:128846454 | G/A | 1.88E-12 | 260 | 18.08 | 15.8 | 5.3 | KM Plot |
| COAD | rs62473494 | chr7:130116118 | A/G | 0 | 260 | 16.47 | 29.97 | 1.97 | KM Plot |
| COAD | rs6438146 | chr3:113126043 | C/T | 2.97E-5 | 265 | 20.57 | 19.78 | 14.05 | KM Plot |
| COAD | rs6561414 | chr13:48506883 | C/G | 1.44E-6 | 257 | 16.47 | 20.3 | 17.8 | KM Plot |
| COAD | rs6580794 | chr12:51545879 | C/T | 2.22E-5 | 259 | 18.9 | 19.95 | 7.87 | KM Plot |
| COAD | rs6585023 | chr10:112668381 | A/G | 1.95E-6 | 259 | 14.13 | 16.1 | 19.78 | KM Plot |
| COAD | rs6822310 | chr4:10770080 | C/T | 0 | 263 | 19.5 | 15.15 | 0 | KM Plot |
| COAD | rs7083614 | chr10:135226236 | G/A | 6.79E-7 | 252 | 19.3 | 16.87 | 14.73 | KM Plot |
| COAD | rs71459334 | chr12:56434210 | T/C | 2.74E-5 | 261 | 18.05 | 22.33 | 5.87 | KM Plot |